RBPDB- RNA-Binding Protein DataBase | Tool name | RBPDB- RNA-Binding Protein DataBase |
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| URL | http://rbpdb.ccbr.utoronto.ca/ |
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| Important features | The RNA-Binding Protein DataBase (RBPDB) predominantly contains experimentally derived information on RNA-binding sites, obtained by manual curation from primary literature sources. |
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| Citations | Cook KB, Kazan H, Zuberi K, Morris Q, Hughes TR. RBPDB: a database of
RNA-binding specificities. Nucleic Acids Res. 2011 Jan;39(Database issue):D301-8.
Epub 2010 Oct 29. PubMed PMID: 21036867 |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | FUNCTIONAL ANALYSIS: regulation/ expression, EXPERIMENTAL: microRNA data with evidence, SPECIES: human, SPECIES: fly, BROAD SCOPE RESOURCES: miscellanous, http://rbpdb.ccbr.utoronto.ca/, The RNA-Binding Protein DataBase (RBPDB) predominantly contains experimentally derived information on RNA-binding sites- obtained by manual curation from primary literature sources., Cook KB- Kazan H- Zuberi K- Morris Q- Hughes TR. RBPDB: a database of
RNA-binding specificities. Nucleic Acids Res. 2011 Jan;39(Database issue):D301-8.
Epub 2010 Oct 29. PubMed PMID: 21036867, 2010, 100, Online/ downloadable , I. SPECIES SUPPORTED INCLUDE: Homo sapiens- Mus musculus- Drosophila melanogaster- Caenorhabditis elegan II. QUERY OR INPUT DATA: 1. Search by domain : a. RNA recognition motif b. K Homology c. CCCH Zinc Finger d. Other domains 2. Search by species 3. Enter genes 4. Predict Binding Sites: enter sequence 6. Submit data III. OUTPUT DATA: depends on the type of analysis chosen. Details related to gene- RNA binding domains- experimental details- homologs etc. |
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